--- parmetis-3.1.orig/Makefile.in +++ parmetis-3.1/Makefile.in @@ -1,22 +1,22 @@ # Which compiler to use -CC = mpicc +CC = gcc # What optimization level to use OPTFLAGS = -O3 # Include directories for the compiler -INCDIR = -I/opt/local/include +INCDIR = -I/usr/lib/mpich/include # What options to be used by the compiler COPTIONS = # Which loader to use -LD = mpicc +LD = gcc # In which directories to look for any additional libraries -LIBDIR = -L/opt/local/lib -L/usr/lib +LIBDIR = -L/usr/lib/mpich/lib/shared -L/usr/lib/mpich/lib # What additional libraries to link the programs with (eg., -lmpi) #XTRALIBS = -lefence --- parmetis-3.1.orig/METISLib/Makefile +++ parmetis-3.1/METISLib/Makefile @@ -1,5 +1,8 @@ include ../Makefile.in +all: ../libmetis.a ../libmetis.so + +.SUFFIXES: .c .lo .o CFLAGS = $(COPTIONS) $(OPTFLAGS) -I. $(INCDIR) @@ -16,18 +19,28 @@ kvmetis.o kwayvolrefine.o kwayvolfm.o subdomains.o \ mfm.o memory.o mrefine.o checkgraph.o +SHLOBJS = $(OBJS:.o=.lo) + .c.o: $(CC) $(CFLAGS) -c $*.c +.c.lo: + $(CC) $(CFLAGS) -fPIC -DPIC -c $< -o $@ + ../libmetis.a: $(OBJS) $(AR) $@ $(OBJS) $(RANLIB) $@ +../libmetis.so: $(SHLOBJS) + $(CC) -shared $^ -Wl,-soname,libmetis.so.3.1 -o $@.3.1 \ + $(LIBDIR) -lmpich + ln -s libmetis.so.3.1 $@ + clean: - rm -f *.o + rm -f *.o *.lo realclean: - rm -f *.o ; rm -f ../libmetis.a + rm -f *.o *.lo ../libmetis.* checkin: --- parmetis-3.1.orig/ParMETISLib/Makefile +++ parmetis-3.1/ParMETISLib/Makefile @@ -1,5 +1,8 @@ include ../Makefile.in +all: ../libparmetis.a ../libparmetis.so + +.SUFFIXES: .c .lo .o CFLAGS = $(COPTIONS) $(OPTFLAGS) -I. $(INCDIR) @@ -18,19 +21,28 @@ selectq.o akwayfm.o serial.o move.o \ mmetis.o mesh.o memory.o weird.o backcompat.o +SHLOBJS = $(OBJS:.o=.lo) + .c.o: $(CC) $(CFLAGS) -c $*.c +.c.lo: + $(CC) $(CFLAGS) -fPIC -DPIC -c $< -o $@ ../libparmetis.a: $(OBJS) $(AR) $@ $(OBJS) $(RANLIB) $@ +../libparmetis.so: $(SHLOBJS) + $(CC) -shared $^ -Wl,-soname,libparmetis.so.3.1 -o $@.3.1 \ + $(LIBDIR) -lmpich + ln -s libparmetis.so.3.1 $@ + clean: - rm -f *.o + rm -f *.o *.lo realclean: - rm -f *.o ; rm -f ../libparmetis.a + rm -f *.o *.lo ../libparmetis.* checkin: --- parmetis-3.1.orig/debian/mtest.1 +++ parmetis-3.1/debian/mtest.1 @@ -0,0 +1,13 @@ +.TH mtest 1 "ParMetis mesh partition test" "DEBIAN" \" -*- nroff -*- +.SH NAME +mtest \- ParMetis mesh partition test +.SH SYNOPSIS +\fBmtest [MagicNumber]\fP +.SH DESCRIPTION +This program tests partitioning of the file using the ParMetis +libraries. Several sample files are located in the parmetis-doc package in the +/usr/share/doc/parmetis-doc/examples directory. +.PP +For more information, please see the documentation in the parmetis-doc package. +.SH AUTHOR +Adam Powell --- parmetis-3.1.orig/debian/changelog +++ parmetis-3.1/debian/changelog @@ -0,0 +1,46 @@ +parmetis (3.1-3) unstable; urgency=low + + * Rebuild using new mpich library package. + * Fixed libparmetis-dev Depends in control. + * Switched from mpicc to gcc to get shlib dependencies right. + + -- Adam C. Powell, IV Tue, 30 Aug 2005 13:18:35 -0400 + +parmetis (3.1-2) unstable; urgency=low + + * Declared conflict between parmetis-test and pimppa (closes: #308846). + * Changed mpich build dependency to libmpich1.0-dev. + * Other minor changes to dependencies. + + -- Adam C. Powell, IV Wed, 18 May 2005 06:40:33 -0400 + +parmetis (3.1-1) unstable; urgency=low + + * New upstream. + * Removed redundant data from parmetis-test package which is already in -doc, + adjusted the ptest and meshtest man pages accordingly (closes: #233428). + + -- Adam C. Powell, IV Wed, 18 Feb 2004 11:46:58 -0500 + +parmetis (3.0-3) unstable; urgency=low + + * Fixed parmetis.h to work with C++. (closes: #200904) + * Added shared library with its very own package. + * Changed name of -dev package. + * Added -test package with binaries and example files from Test dir. + * Added overrides files because lintian mistakenly thinks this is gpl. :-) + + -- Adam C. Powell, IV Thu, 7 Aug 2003 20:01:45 -0400 + +parmetis (3.0-2) unstable; urgency=low + + * New permission from upstream should result in acceptance (closes: #186116). + + -- Adam C. Powell, IV Tue, 8 Apr 2003 17:54:53 -0400 + +parmetis (3.0-1) unstable; urgency=low + + * First packaging attempt, first upload (closes: #186116). + * Only static libraries for now, since that's all that upstream generates. + + -- Adam C. Powell, IV Thu, 27 Mar 2003 20:15:32 -0500 --- parmetis-3.1.orig/debian/control +++ parmetis-3.1/debian/control @@ -0,0 +1,59 @@ +Source: parmetis +Section: non-free/math +Priority: extra +Maintainer: Adam C. Powell, IV +Standards-Version: 3.6.2.1 +Build-Depends: debhelper (>= 3.0), libmpich1.0-dev + +Package: libparmetis-dev +Architecture: any +Section: non-free/libdevel +Depends: libmpich1.0-dev, libparmetis3.1 (= ${Source-Version}) +Suggests: parmetis-doc +Replaces: parmetis-dev +Conflicts: parmetis-dev +Description: Parallel Graph Partitioning and Sparse Matrix Ordering Libs: Devel + ParMetis computes minimal-cut partitions of graphs and meshes in parallel, and + orders variables for minimal fill when using direct solvers for sparse + matrices. It does all this in parallel, and also can efficiently re-partition + a graph or mesh whose connectivity has changed. + . + This package contains files needed to develop programs using ParMetis. + +Package: libparmetis3.1 +Architecture: any +Section: non-free/libs +Depends: ${shlibs:Depends} +Description: Parallel Graph Partitioning and Sparse Matrix Ordering Shared Libs + ParMetis computes minimal-cut partitions of graphs and meshes in parallel, and + orders variables for minimal fill when using direct solvers for sparse + matrices. It does all this in parallel, and also can efficiently re-partition + a graph or mesh whose connectivity has changed. + . + This package contains the ParMetis shared libraries. + +Package: parmetis-test +Architecture: any +Section: non-free/math +Depends: ${shlibs:Depends} +Recommends: parmetis-doc +Conflicts: pimppa +Description: Parallel Graph Partitioning and Sparse Matrix Ordering Tests + ParMetis computes minimal-cut partitions of graphs and meshes in parallel, and + orders variables for minimal fill when using direct solvers for sparse + matrices. It does all this in parallel, and also can efficiently re-partition + a graph or mesh whose connectivity has changed. + . + This package contains programs which test the ParMetis libraries using files + in the parmetis-doc package's examples directory. + +Package: parmetis-doc +Architecture: all +Section: non-free/doc +Description: Parallel Graph Partitioning and Sparse Matrix Ordering Lib - Docs + ParMetis computes minimal-cut partitions of graphs and meshes in parallel, and + orders variables for minimal fill when using direct solvers for sparse + matrices. It does all this in parallel, and also can efficiently re-partition + a graph or mesh whose connectivity has changed. + . + This package contains the documentation and example files. --- parmetis-3.1.orig/debian/rules +++ parmetis-3.1/debian/rules @@ -0,0 +1,73 @@ +#!/usr/bin/make -f +# based on the sample debian/rules file for GNU hello by Ian Jackson. + +package=ParMetis +export DH_COMPAT=3 + +build: + dh_testdir + $(MAKE) + touch $@ + +clean: + dh_testdir + $(MAKE) clean + rm -f build + dh_clean + +binary-indep: + dh_testdir -i + dh_testroot -i + dh_installdirs -i + # Overrides file + install -d debian/parmetis-doc/usr/share/lintian/overrides + install -m 644 debian/parmetis-doc.overrides debian/parmetis-doc/usr/share/lintian/overrides/parmetis-doc + dh_installdocs -i + dh_installexamples -i + dh_installchangelogs -i + dh_compress -i + dh_fixperms -i + dh_installdeb -i + dh_gencontrol -i + dh_md5sums -i + dh_builddeb -i + +binary-arch: + dh_testdir -a + dh_testroot -a + dh_installdirs -a + # I figure manual installation is simple enough with such small pkgs. + install -d debian/libparmetis-dev/usr/lib + install *.a debian/libparmetis-dev/usr/lib + ln -s libmetis.so.3.1 debian/libparmetis-dev/usr/lib/libmetis.so + ln -s libparmetis.so.3.1 debian/libparmetis-dev/usr/lib/libparmetis.so + install -d debian/libparmetis-dev/usr/include + install *.h debian/libparmetis-dev/usr/include + chmod 644 debian/libparmetis-dev/usr/include/*.h + install -d debian/libparmetis3.1/usr/lib + cp -p *.so.* debian/libparmetis3.1/usr/lib + install -d debian/parmetis-test/usr/bin + install Graphs/ptest Graphs/mtest debian/parmetis-test/usr/bin + # Overrides files + install -d debian/libparmetis-dev/usr/share/lintian/overrides + install -m 644 debian/libparmetis-dev.overrides debian/libparmetis-dev/usr/share/lintian/overrides/libparmetis-dev + install -d debian/libparmetis3.1/usr/share/lintian/overrides + install -m 644 debian/libparmetis3.1.overrides debian/libparmetis3.1/usr/share/lintian/overrides/libparmetis3.1 + install -d debian/parmetis-test/usr/share/lintian/overrides + install -m 644 debian/parmetis-test.overrides debian/parmetis-test/usr/share/lintian/overrides/parmetis-test + dh_installdocs -a + dh_installman -pparmetis-test debian/mtest.1 debian/ptest.1 + dh_installchangelogs -a + dh_strip -a + dh_makeshlibs -a + dh_compress -a + dh_fixperms -a + dh_installdeb -a + dh_shlibdeps -a + dh_gencontrol -a + dh_md5sums -a + dh_builddeb -a + +binary: binary-indep binary-arch + +.PHONY: binary binary-arch binary-indep clean checkroot --- parmetis-3.1.orig/debian/copyright +++ parmetis-3.1/debian/copyright @@ -0,0 +1,245 @@ +This is non-free software written by George Karypis et al. and copyrighted by +the Regents of the University of Minnesota. It was downloaded from +http://www-users.cs.umn.edu/~karypis/metis/ and Debianized by Adam Powell + on March 10, 2003. The included copyright notice +follows, along with the email sent by Dr. Karypis authorizing distribution with +Debian. + +Copyright Notice +---------------- + +The ParMETIS/METIS package is copyrighted by the Regents of the +University of Minnesota. It can be freely used for educational and +research purposes by non-profit institutions and US government agencies +only. Other organizations are allowed to use ParMETIS/METIS only for +evaluation purposes, and any further uses will require prior approval. +The software may not be sold or redistributed without prior approval. +One may make copies of the software for their use provided that the +copies, are not sold or distributed, are used under the same terms +and conditions. + +As unestablished research software, this code is provided on an +``as is'' basis without warranty of any kind, either expressed or +implied. The downloading, or executing any part of this software +constitutes an implicit agreement to these terms. These terms and +conditions are subject to change at any time without prior notice. + +X-UIDL: p0/"!p*Q"!cBh!!$<-"! +X-Mozilla-Status: 0013 +X-Mozilla-Status2: 00000000 +Envelope-to: hazelsct@lyre.mit.edu +Received: from fort-point-station.mit.edu ([18.7.7.76]) + by lyre.mit.edu with esmtp (Exim 3.35 #1 (Debian)) + id 192XKR-0008FG-00 + for ; Mon, 07 Apr 2003 10:10:31 -0400 +Received: from mhub-w2.tc.umn.edu (mhub-w2.tc.umn.edu [160.94.160.45]) + by fort-point-station.mit.edu (8.12.4/8.9.2) with ESMTP id h37EAUal002913 + for ; Mon, 7 Apr 2003 10:10:30 -0400 (EDT) +Received: from PetrosII (falcon.cs.umn.edu [160.94.179.138] (may be forged)) by mhub-w2.tc.umn.edu with ESMTP for hazelsct@mit.edu; Mon, 7 Apr 2003 09:10:30 -0500 (CDT) +From: "George Karypis" +To: "'Adam C Powell IV'" +Subject: RE: Distributing ParMETIS with Debian +Date: Mon, 7 Apr 2003 09:08:07 -0500 +Message-ID: <001b01c2fd0f$1d44a550$f88010ac@PetrosII> +MIME-Version: 1.0 +Content-Type: multipart/alternative; + boundary="----=_NextPart_000_001C_01C2FCE5.346E9D50" +X-Priority: 3 (Normal) +X-MSMail-Priority: Normal +X-Mailer: Microsoft Outlook, Build 10.0.4024 +X-MimeOLE: Produced By Microsoft MimeOLE V6.00.2800.1106 +In-Reply-To: <3E907557.8050800@mit.edu> +Importance: Normal +X-Umn-Remote-Mta: [N] falcon.cs.umn.edu #+HF+LO +X-UIDL: p0/"!p*Q"!cBh!!$<-"! +Status: U + +This is a multi-part message in MIME format. + +------=_NextPart_000_001C_01C2FCE5.346E9D50 +Content-Type: text/plain; + charset="US-ASCII" +Content-Transfer-Encoding: 7bit + + +Adam, + +Yes, you have my permission to include ParMetis's source and binary +distributions on Debian's mirror +sites. + +George + +-----Original Message----- +From: Adam C Powell IV [mailto:hazelsct@mit.edu] +Sent: Sunday, April 06, 2003 1:44 PM +To: George Karypis +Cc: James Troup +Subject: Re: Distributing ParMETIS with Debian + + +Hello, + +Thank you again for granting permission to upload ParMETIS into Debian. +I successfully built packages and uploaded them, but they were rejected +by the archive manager, because we need to make certain of your approval +for one thing not mentioned in my original message: + +Do you approve of the posting of ParMETIS source and binary packages on +the 800+ Debian mirror servers around the world, as a means of delivery +to our users? + +Also, I made an error in my original message: because of its non-free +status, my ParMETIS packages will not be automatically built for the +eleven processor architectures mentioned. I personally have the +facilities to build packages for the IA-32, Alpha, PowerPC and ARM +architectures, and plan to do so; when a Debian release approaches, I +might also use some of the project's machines to built the final release +binary packages for other popular computing architectures such as IA-64 +(Itanium), Sparc, HP PA-RISC and S/390. And the package source will be +available for people to build their own packages on whatever +architecture they please. + +Again, thank you, and I will keep you informed of the package's +progress. + +George Karypis wrote: + + +Adam, + +Sure, go ahead and include ParMetis in Debian. There are a couple +outstanding bugs with the +current release of ParMetis that I will be fixing soon, but the changes +will be minimal. + +George + +-----Original Message----- +From: Adam C Powell IV [mailto:hazelsct@mit.edu] +Sent: Sunday, March 23, 2003 1:42 PM +To: metis@cs.umn.edu +Subject: Distributing ParMETIS with Debian + + +Greetings, + +I am writing to request your permission to distribute ParMETIS with +Debian GNU/Linux. Debian (http://www.debian.org/) is an all-volunteer +distribution of the Linux kernel with thousands of accompanying software +packages, similar to but much larger than RedHat, SuSE, Mandrake, +Lindows, etc. (in fact, Lindows is based on Debian's free packages). I +am one of the ~850 volunteer maintainers of Debian; I maintain the PETSc + and Babel + packages among others. +Because PETSc can link to ParMETIS, I would like to be able to include +it in the Debian distribution. + +[I am aware of the work of Eray Ozkural to package METIS for Debian, as +I was his mentor and sponsor when he was doing that work as part of the +process of becoming a Debian maintainer. Unfortunately, for various +reasons his application to become a maintainer was rejected, and his +packages including METIS removed. This will thus be a new packaging +effort by an already-approved maintainer.] + +Debian packages are grouped according to the "freedom" of software +licenses. Since the ParMETIS license is not "free" by Debian standards +(http://www.debian.org/intro/free ; basically the same as the Open +Source Definition), it +would go ino the "non-free" section of Debian, which would alert +potential users that copying and usage are restricted, so they should +check the copyright file for such terms. (The other two sections are +"main", consisting entirely of free software, and "contrib", consisting +of free software which depends on non-free software, e.g. when PETSc +linking to ParMETIS is uploaded, its dependency on non-free ParMETIS +will require moving it into contrib.) In every ParMETIS package (static +libs, shared libs, documentation, etc.), your copyright conditions would +appear as the file /usr/share/doc/parmetis*/copyright , and users would +be bound by those terms just as if they downloaded ParMETIS from your +website. + +When/if I receive your permission, I will upload into the Debian archive +the pristine ParMETIS source tarball, together with a gzipped patch +containing the Debian packaging, and a third small file with MD5 +checksums of the first two and a list of Debian packages required to +build ParMETIS binaries; this third file will be GPG-signed by me to +guarantee the integrity of all three files. I would thus become the +"Debian maintainer" of the ParMETIS package, in the same way as I am the +maintainer of packages for PETSc, Babel, Surface Evolver, and installers +for the Compaq Alpha Linux compilers. With your permission, I would +like to make some small changes, such as building a shared ParMETIS +library, and fixing any bugs I might find. I will inform you in advance +of any such changes, and you will be able to exercise as much or as +little control over these changes as you like. + +The Debian packaging mentioned above consists of a set of scripts and +definition files for the building of binary Debian packages based on the +source code. Taken together, these files serve a similar purpose to the +spec file for creating RedHat .rpm packages, but with considerably more +flexibility. The binary Debian packages will then be built by +autobuilder machines for all of the target architectures, which +currently include: IA-32, IA-64, Alpha, Sparc, PowerPC, M68K (yes, there +are still a bunch of Amiga users around :-), MIPS (big- and +little-endian), ARM, S/390 and PA-RISC; support for Hitachi SuperH and +alternate kernels on some of these architectures is in the works. + +This packaging will make ParMETIS and packages which depend on it +considerably easier to use, by allowing users to download, say, a +parallel fluid dynamics package named "fluids" by typing "apt-get +install fluids", which would download and install fluids, the ParMETIS +library, and all other support libraries required to run fluids. Users +(who run Debian) will not need to compile or link anything, this work +will all be done in advance. + +If you (and the University of Minnesota) agree to the above, I will +begin working on the Debian packaging for ParMETIS, and when that +packaging is complete, will inform you and upload it into Debian. This +will place ParMETIS in the "unstable" distribution immediately, and when +it meets several criteria (no build failures on any architecture, no +bugs of severity serious or higher, 10 days since upload into unstable), +it will be moved into the "testing" distribution. If the package is in +the "testing" distribution when a release is made, it will be included +in that "stable" distribution release. + +Independent of your decision regarding Debian, I would like to request +that you (U.Mn. etc.) make the METIS family available under a free/open +source license of some kind. For example, the Babel SIDL compiler is +released under the GNU Lesser General Public license, which among other +things, eliminates the need for this sort of permission request for +Debian redistribution (though I am in frequent contact with Babel's +authors, and consulted them before my initial upload), and also allows +me to patch it in various ways important to my users. In your case, you +might be more interested in the GNU General Public License, which would +not allow linking into proprietary software packages. (As the copyright +holder, you could also license *METIS to companies under separate +conditions.) As another example, I have simplified linking of the PETSc +libraries with C++ code without the extra disk space and build time +required by the authors' C++ scheme, and patched a problem in PETSc's +timestepping code; both of those patches were sent to the PETSc authors. +Thus open source licensing adds value to PETSc, as it does for such +well-known software as Linux, Apache, Mozilla, GNOME, OpenOffice, +autoconf/automake/libtool, etc., and could do the same for ParMETIS. + +Thank you for your time and attention. I hope that you will approve of +my request to package and distribute ParMETIS with Debian, and that you +will give serious consideration to open source licensing of ParMETIS. + +Sincerely, + +-- + +Adam Powell http://lyre.mit.edu/~powell/ + +Thomas B. King Assistant Professor of Materials Engineering +77 Massachusetts Ave. Rm. 4-117 Phone (617) 452-2086 +Cambridge, MA 02139 USA Fax (617) 253-5418 + + +------=_NextPart_000_001C_01C2FCE5.346E9D50 +Content-Type: text/html; + charset="US-ASCII" +Content-Transfer-Encoding: quoted-printable + +[removed to avoid having to read "MSHTML" formatted material] + +------=_NextPart_000_001C_01C2FCE5.346E9D50-- --- parmetis-3.1.orig/debian/ptest.1 +++ parmetis-3.1/debian/ptest.1 @@ -0,0 +1,13 @@ +.TH ptest 1 "ParMetis graph partition test" "DEBIAN" \" -*- nroff -*- +.SH NAME +ptest \- ParMetis graph partition test +.SH SYNOPSIS +\fBptest \fP +.SH DESCRIPTION +This program tests partitioning of the file using the ParMetis +libraries. Several sample files are located in the parmetis-doc package in the +/usr/share/doc/parmetis-doc/examples directory. +.PP +For more information, please see the documentation in the parmetis-doc package. +.SH AUTHOR +Adam Powell --- parmetis-3.1.orig/debian/parmetis-doc.docs +++ parmetis-3.1/debian/parmetis-doc.docs @@ -0,0 +1,2 @@ +README +Manual/* --- parmetis-3.1.orig/debian/parmetis-doc.examples +++ parmetis-3.1/debian/parmetis-doc.examples @@ -0,0 +1,2 @@ +Graphs/*.graph* +Graphs/*.hex3d --- parmetis-3.1.orig/debian/parmetis-doc.doc-base +++ parmetis-3.1/debian/parmetis-doc.doc-base @@ -0,0 +1,13 @@ +Document: parmetis-doc +Title: ParMETIS Parallel Graph Partitioning and Sparse Matrix Ordering +Author: George Karypis +Abstract: ParMETIS is an MPI-based parallel library that implements a variety + of algorithms for partitioning unstructured graphs, meshes, and for computing + fill-reducing orderings of sparse matrices. +Section: Apps/Math + +Format: postscript +Files: /usr/share/doc/parmetis-doc/*.ps.gz + +Format: pdf +Files: /usr/share/doc/parmetis-doc/*.pdf.gz --- parmetis-3.1.orig/debian/libparmetis-dev.docs +++ parmetis-3.1/debian/libparmetis-dev.docs @@ -0,0 +1 @@ +README --- parmetis-3.1.orig/debian/libparmetis-dev.overrides +++ parmetis-3.1/debian/libparmetis-dev.overrides @@ -0,0 +1,2 @@ +libparmetis-dev: old-fsf-address-in-copyright-file +libparmetis-dev: copyright-should-refer-to-common-license-file-for-gpl --- parmetis-3.1.orig/debian/parmetis-doc.overrides +++ parmetis-3.1/debian/parmetis-doc.overrides @@ -0,0 +1,2 @@ +parmetis-doc: old-fsf-address-in-copyright-file +parmetis-doc: copyright-should-refer-to-common-license-file-for-gpl --- parmetis-3.1.orig/debian/parmetis-test.overrides +++ parmetis-3.1/debian/parmetis-test.overrides @@ -0,0 +1,2 @@ +parmetis-test: old-fsf-address-in-copyright-file +parmetis-test: copyright-should-refer-to-common-license-file-for-gpl --- parmetis-3.1.orig/debian/libparmetis3.1.overrides +++ parmetis-3.1/debian/libparmetis3.1.overrides @@ -0,0 +1,2 @@ +libparmetis3.1: old-fsf-address-in-copyright-file +libparmetis3.1: copyright-should-refer-to-common-license-file-for-gpl