File rheoplast.c

RCS Header: /cvsroot/rheoplast/rheoplast.c,v 1.113 2006/03/06 19:37:36 wanida Exp

This is the main RheoPlast file. If you want to add a module, search this file for the word "modules" to help you know where to insert your function calls, HELP definition, etc. Also see section \ref{newmodule} for other files which need to be modified in the process of adding a module.

Included Files

Preprocessor definitions

#define __FUNCT__ "temp_parameters_line"

#define __FUNCT__ "temp_parameters_boundary_line"

#define __FUNCT__ "func_interior_line"

#define __FUNCT__ "func_boundary_line"

#define __FUNCT__ "step_interior_line"

#define __FUNCT__ "jack_interior_line"

#define __FUNCT__ "calculate_integration_variables"

#define __FUNCT__ "thets_rhs"

This provides a right hand side vector for PETSc's (semi-)implicit timestepping solvers using the function func_interior_line.

This should probably go into timestep.h since it is generic. In the future, it will calculate and store temporary parameters only on an "as-needed" basis, which is to say, it will calculate and store them only at the line of calculation and its neighbor lines (neighbor planes needed in 3-D). This should save quite a bit of memory.

This is somewhat deprecated, now that timestep.c has constrained (semi-)implicit timestepping which bypasses it (the implicit_steptime function). But if such capability is up-ported into PETSc, then this will be useful again.
int thets_rhs It returns zero (or an error code).
TS thets Timestepping context from PETSc.
PetscScalar time Current time.
Vec unk Vector of unknowns from which to calculate functions.
Vec func Vector into which to put function values.
void *user User data structure pointer.

#define __FUNCT__ "tsmonitor"

#define DPRINTF( fmt, args... )

#define __FUNCT__ "main"

Global Variable Surf

ISurface Surf

Global Variable Disp

IDisplay Disp

Local Variables

help
PETSc help string, printed when run with -help. Note that it includes entries for each of the modules' header files.

static char help[]

Global Function calculate_integration_variables()

Loop over y and z, calling *_integrate_interior_line, to calculate the integration variable field.

int calculate_integration_variables ( AppCtx* data, PetscScalar time )

int calculate_integration_variables
It returns zero (or an error code).
AppCtx* data
The data structure to use.
PetscScalar time
Current simulation time.

Global Function func_boundary_line()

Evaluate the functions which make up this system on one line of boundary points. The theory is that a line is big enough that the function call and other overheads are really small and we can do acceleration using level 1 BLAS if appropriate, but small enough to be really simple.

void func_boundary_line ( PetscScalar* x, PetscScalar* func, PetscScalar* temp, PetscTruth** mixed_constraints, PetscScalar time, int points, int gxm, int gym, int gzm, int xs, int ys, int zs, int xm, int nx, int ny, int nz, void* user, int side )

PetscScalar* x
The data to evaluate the function for.
PetscScalar* func
Where to put the evaluated function.
PetscScalar* temp
Array of temporary field variables.
PetscTruth** mixed_constraints
Arrays of boolean variables indicating constraint equations in mixed timestep-constraint fields.
PetscScalar time
Current simulation time.
int points
Number of points to evaluate at.
int gxm
The x-width of the ``local'' vector's array, including shadow nodes, for the y-increment.
int gym
The y-width of the ``local'' vector's array, including shadow nodes, for the z-increment.
int gzm
Overall z-width of the array (zero if 2-D).
int xs
Starting x-coordinate of the line.
int ys
Starting y-coordinate of the line.
int zs
Starting z-coordinate of the line.
int xm
Width of the interior part of the line.
int nx
Overall x-width of the entire global array.
int ny
Overall y-width of the entire global array.
int nz
Overall z-width of the entire global array (zero if 2-D).
void* user
User data structure pointer.
int side
Side on which to calculate the function values.
This function simply calls the interior_line_function function from each of the modules.

Global Function func_interior_line()

Evaluate the functions which make up this system on one line of interior points. The theory is that a line is big enough that the function call and other overheads are really small and we can do acceleration using level 1 BLAS if appropriate, but small enough to be really simple.

void func_interior_line ( PetscScalar* x, PetscScalar* func, PetscScalar* temp, PetscTruth** mixed_constraints, PetscScalar time, int points, int gxm, int gym, int gzm, int xs, int ys, int zs, int xm, int nx, int ny, int nz, void* user )

PetscScalar* x
The data to evaluate the function for.
PetscScalar* func
Where to put the evaluated function.
PetscScalar* temp
Array of temporary field variables.
PetscTruth** mixed_constraints
Arrays of boolean variables indicating constraint equations in mixed timestep-constraint fields.
PetscScalar time
Current simulation time.
int points
Number of points to evaluate at.
int gxm
The x-width of the ``local'' vector's array, including shadow nodes, for the y-increment.
int gym
The y-width of the ``local'' vector's array, including shadow nodes, for the z-increment.
int gzm
Overall z-width of the array (zero if 2-D).
int xs
Starting x-coordinate of the line.
int ys
Starting y-coordinate of the line.
int zs
Starting z-coordinate of the line.
int xm
Width of the interior part of the line.
int nx
Overall x-width of the entire global array.
int ny
Overall y-width of the entire global array.
int nz
Overall z-width of the entire global array (zero if 2-D).
void* user
User data structure pointer.
This function simply calls the interior_line_function function from each of the modules.

Global Function jack_interior_line()

Evaluate the Jacobian for this system on one line of interior points. The theory is that a line is big enough that the function call and other overheads are really small and we can do acceleration using level 1 BLAS if appropriate, but small enough to be really simple.

void jack_interior_line ( PetscScalar* x, PetscScalar* temp, Mat jack, PetscScalar time, int points, int gxm, int gym, int gzm, int xs, int ys, int zs, int xm, int nx, int ny, int nz, int firstrow, void* user )

PetscScalar* x
The data to evaluate the function for.
PetscScalar* temp
Array of temporary field variables.
Mat jack
Matrix into which to insert Jacobian values.
PetscScalar time
Current simulation time.
int points
Number of points to evaluate at.
int gxm
The x-width of the ``local'' vector's array, including shadow nodes, for the y-increment.
int gym
The y-width of the ``local'' vector's array, including shadow nodes, for the z-increment.
int gzm
Overall z-width of the array (zero if 2-D).
int xs
Starting x-coordinate of the line.
int ys
Starting y-coordinate of the line.
int zs
Starting z-coordinate of the line.
int xm
Width of the interior part of the line.
int nx
Overall x-width of the entire global array.
int ny
Overall y-width of the entire global array.
int nz
Overall z-width of the entire global array (zero if 2-D).
int firstrow
 
void* user
User data structure pointer.
This function simply calls the interior_line_jacobian function from each of the modules (if it exists).

Global Function main()

This is main().

int main ( int argc, char* argv[] )

int main
It returns an int to the OS.
int argc
Argument count.
char* argv[]
Arguments.
RheoPlast begins its run with PETSc and log file initialization.
It then sets the basic timestepping parameters, from the command line if appropriate.
It then determines which modules will be included in the simulation, and calls those modules' initialization functions to determine the number of field variables and temporary fields.
Next it creates the PETSc distributed arrays, gets the sizes of the local and global boxes, and sets the inverse square grid spacings.
We next create the integration vector if necessary
Next it sets the initial condition, by getting the global arary and calling the modules' labels_initcond functions.
It then initializes the graphics and runs the explicit timestepping solver from timestep.h.
If directed to do so with a nonzero -ts_max_steps command line setting, it then initializes and runs semi-implicit timesteps.
An alternative semi-implicit section uses PETSc's semi-implicit timestepping solver. It is semi-deprecated due to the constrained semi-implicit solver in implicit_steptime, but may come back if that functionality is up-ported into PETSc.
Finally, it cleans up, closing the graphics displays and freeing all memory.

Global Function step_interior_line()

This calculates the dynamic functions using the function func_interior_line and then uses them and the timestep size to determine the explicit timestepping changes to the field variables, on one line.

void step_interior_line ( PetscScalar* old, PetscScalar* new, PetscScalar* temp, PetscTruth** mixed_constraints, PetscScalar time, int points, int gxm, int gym, int gzm, int xs, int ys, int zs, int xm, int nx, int ny, int nz, void* user )

PetscScalar* old
Field variable array in previous timestep.
PetscScalar* new
Field variable array to fill in new timestep.
PetscScalar* temp
Temporary parameters calculated by temp_parameters_line.
PetscTruth** mixed_constraints
Arrays of boolean variables indicating constraint equations in mixed timestep-constraint fields.
PetscScalar time
Current simulation time.
int points
Number of points to calculate at.
int gxm
Overall x-width of the array (for y increment).
int gym
Overall y-width of the array (for z increment).
int gzm
Overall z-width of the array (zero if 2-D).
int xs
Starting x-coordinate of the line.
int ys
Starting y-coordinate of the line.
int zs
Starting z-coordinate of the line.
int xm
Width of the interior part of the line.
int nx
Overall x-width of the entire global array.
int ny
Overall y-width of the entire global array.
int nz
Overall z-width of the entire global array (zero if 2-D).
void* user
User data structure pointer.

Global Function temp_parameters_boundary_line()

This function calculates the temporary parameters on which the function calculation is based on the boundary (in func_interior_line). The theory is that at some point, we'll calculate only the lines in the neighborhood of the current function line, and save gobs and gobs of memory; meanwhile, calculating these once saves a good amount of time.

void temp_parameters_boundary_line ( PetscScalar* x, PetscScalar* temp, PetscScalar time, int points, int gxm, int gym, int gzm, int xs, int ys, int zs, int xm, int nx, int ny, int nz, void* user, int side )

PetscScalar* x
Array of unknowns from which temp parameters are calculated.
PetscScalar* temp
Storage for one line of temp parameters.
PetscScalar time
Current simulation time.
int points
Number of points to evaluate at.
int gxm
The x-width of the ``local'' vector's array, including shadow nodes, for the y-increment.
int gym
The y-width of the ``local'' vector's array, including shadow nodes, for the z-increment.
int gzm
Overall z-width of the array (zero if 2-D).
int xs
Starting x-coordinate of the line.
int ys
Starting y-coordinate of the line.
int zs
Starting z-coordinate of the line.
int xm
Width of the interior part of the line.
int nx
Overall x-width of the entire distributed array.
int ny
Overall y-width of the entire distributed array.
int nz
Overall z-width of the entire distributed array (zero if 2-D).
void* user
User data structure pointer.
int side
Side on which to calculate the temp parameters.
This function simply calls the temp_parameters_line function from each of the modules.

Global Function temp_parameters_line()

This function calculates the temporary parameters on which the function calculation is based (in func_interior_line). The theory is that at some point, we'll calculate only the lines in the neighborhood of the current function line, and save gobs and gobs of memory; meanwhile, calculating these once saves a good amount of time.

void temp_parameters_line ( PetscScalar* x, PetscScalar* temp, PetscScalar time, int points, int gxm, int gym, int gzm, int xs, int ys, int zs, int xm, int nx, int ny, int nz, void* user )

PetscScalar* x
Array of unknowns from which temp parameters are calculated.
PetscScalar* temp
Storage for one line of temp parameters.
PetscScalar time
Current simulation time.
int points
Number of points to evaluate at.
int gxm
The x-width of the ``local'' vector's array, including shadow nodes, for the y-increment.
int gym
The y-width of the ``local'' vector's array, including shadow nodes, for the z-increment.
int gzm
Overall z-width of the array (zero if 2-D).
int xs
Starting x-coordinate of the line.
int ys
Starting y-coordinate of the line.
int zs
Starting z-coordinate of the line.
int xm
Width of the interior part of the line.
int nx
Overall x-width of the entire distributed array.
int ny
Overall y-width of the entire distributed array.
int nz
Overall z-width of the entire distributed array (zero if 2-D).
void* user
User data structure pointer.
This function simply calls the temp_parameters_line function from each of the modules.

Global Function tsmonitor()

This plots the current data, if the step number is right (according to the monsteps and explicit_monsteps command line options).

int tsmonitor ( int step, PetscScalar time, PetscScalar deltat, void* user )

int tsmonitor
Returns zero or an error code.
int step
Current timestep number.
PetscScalar time
Current simulation time.
PetscScalar deltat
Current timestep size.
void* user
User data structure pointer.
In addition to printing various diagnostics (delta t, min/max field values, etc.), this also calculates the "time velocity" since the last call to tsmonitor, which is the simulated time divided by CPU time spent in this process.